Tumor Immune MicroEnvironment cell composition DataBase
TIMEDB is an online human tumor immune micro-environment (TIME) cell-type composition database. TIMEDB provides TIME cell-type composition data estimated from bulk expression profiles, with automate analysis and interactive visualization. Please cite our NAR paper.
TIMEDB has three key features:
- Curated TIME database of 39706 samples and 546 datasets across 43 cancers, including bulk RNA data, clinical data, TIME cell-type composition estimated by 10 state-of-the-art tools, C1-C6 subtyping data, immunomodulatory gene expression profiles, etc.
- Automatic interfaces of 21 tumor immune microenvironment analyses, including TIME cell-type composition estimation, subtyping, survival, correlation, etc.
- Interactive visualizations of clinical features, TIME cell-type composition, patient subtyping, survival, and correlation profile from the database or analysis.
Human tumor immune micro-environment database
Curated databse with over 39706 samples of RNA-seq across 43 cancers , immune infliatration fraction, immune subtype annotation data.
10 online tumor immune microenvironment analysis category 21 analyses.
Nov. 19, 2022, 09:00 a.m.
Our journal is published in NAR successfully. Please check here for details.
Oct. 17, 2022, 12:00 a.m.
We rewrote tutorial pages and added some user guidance.
Oct. 6, 2022, 12:00 a.m.
We adjusted layout of tutorial pages and fixed some bugs.
Sep. 27, 2022, 08:00 p.m.
We created links for bug reporting and fixed bugs of the search bar in tutorial pages. We also optimized the UMAP visualization for batch effect analysis.
Sep. 26, 2022, 12:00 a.m.
We rewrited tutorial pages and fixed some known bugs.
Sep. 19, 2022, 10:00 a.m.
We fixed some cell-type composition landscape plot bugs.
Sep. 5, 2022, 9:10 a.m.
We adjusted smoothly transitioning numbers and fixed some known bugs.
Aug. 6, 2022, 12:50 a.m.
We fixed known bugs and improved tutorial pages.
July. 25, 2022, 5:45 p.m.
More pipelines have passed testing and been put into production.
June. 30, 2022, 7:50 p.m.
We improved the database schema. It is possible for users to check more than one data visualization for a single analysis task.
May. 15, 2022, 3:10 p.m.
We rewrited the back-end logic for task results checking and beautified the workspace page.
Apr. 30, 2022, 12:50 a.m.
We added API to track website visiting statistics.
Mar. 30, 2022, 9:30 a.m.
We created the download page. Now users can easily find and download all data files available in a single page.
Feb. 26, 2022, 4:10 p.m.
we uploaded more data after rechecking the accuracy and validation of our database.
Feb. 15, 2022, 8: 30 p.m.
We added new functions that users can submit the demo tasks or check the analysis results of demo tasks to get familiar with the task submission procedure.
Jan. 30, 2022, 9:20 a.m.
We created the tutorial page.
Dec. 28, 2021, 12:30 p.m.
Analysis module categorization & Submit page logic rewritting.
Dec. 1, 2021, 11:25 p.m.
We fixed known bugs.
Nov. 5, 2021, 10:20 p.m.
We added new functions. Users are allowed to create their own datasets using samples from our database.
Nov. 2, 2021, 5:30 p.m.
More analysis modules have passed testing.
Oct. 15, 2021, 9:00 p.m.
We completed several analysis modules with data visualizations available.
Seq. 18, 2021, 10:00 p.m.
Clinical data and RNA data uploading & Database recheck.
Sep. 1, 2021, 9:30 p.m.
we beautified home page and added the contact page and the privacy terms page.
Add database pages
Aug. 5, 2021, 6:05 p.m.
Cancers, datasets and samples tables are ready to display.
July. 1, 2021, 12:30 p.m.
Main frame completion & Platform deployment.