AnalysisTIMEDB
Tumor Immune MicroEnvironment cell composition DataBase
TIMEDB is an online human tumor immune micro-environment (TIME) cell-type composition database. TIMEDB provides TIME cell-type composition data estimated from bulk expression profiles, with automate analysis and interactive visualization. Please cite our NAR paper.
TIMEDB has three key features:
- Curated TIME database of 39706 samples and 546 datasets across 43 cancers, including bulk RNA data, clinical data, TIME cell-type composition estimated by 10 state-of-the-art tools, C1-C6 subtyping data, immunomodulatory gene expression profiles, etc.
- Automatic interfaces of 21 tumor immune microenvironment analyses, including TIME cell-type composition estimation, subtyping, survival, correlation, etc.
- Interactive visualizations of clinical features, TIME cell-type composition, patient subtyping, survival, and correlation profile from the database or analysis.
Function
Human tumor immune micro-environment database
Curated databse with over 39706 samples of RNA-seq across 43 cancers , immune infliatration fraction, immune subtype annotation data.
Automatic analyses
10 online tumor immune microenvironment analysis category 21 analyses.
NEWS
Congratulations!
Nov. 19, 2022, 09:00 a.m.
Our journal is published in NAR successfully. Please check here for details.
V1.2.2 update
Oct. 17, 2022, 12:00 a.m.
We rewrote tutorial pages and added some user guidance.
V1.2.1 update
Oct. 6, 2022, 12:00 a.m.
We adjusted layout of tutorial pages and fixed some bugs.
V1.2.0 update
Sep. 27, 2022, 08:00 p.m.
We created links for bug reporting and fixed bugs of the search bar in tutorial pages. We also optimized the UMAP visualization for batch effect analysis.
V1.1.9 update
Sep. 26, 2022, 12:00 a.m.
We rewrited tutorial pages and fixed some known bugs.
V1.1.8 update
Sep. 19, 2022, 10:00 a.m.
We fixed some cell-type composition landscape plot bugs.
V1.1.7 update
Sep. 5, 2022, 9:10 a.m.
We adjusted smoothly transitioning numbers and fixed some known bugs.
V1.1.6 update
Aug. 6, 2022, 12:50 a.m.
We fixed known bugs and improved tutorial pages.
V1.1.5 update
July. 25, 2022, 5:45 p.m.
More pipelines have passed testing and been put into production.
V1.1.4 update
June. 30, 2022, 7:50 p.m.
We improved the database schema. It is possible for users to check more than one data visualization for a single analysis task.
V1.1.3 update
May. 15, 2022, 3:10 p.m.
We rewrited the back-end logic for task results checking and beautified the workspace page.
V1.1.2 update
Apr. 30, 2022, 12:50 a.m.
We added API to track website visiting statistics.
V1.1.1 update
Mar. 30, 2022, 9:30 a.m.
We created the download page. Now users can easily find and download all data files available in a single page.
V1.1.0 update
Feb. 26, 2022, 4:10 p.m.
we uploaded more data after rechecking the accuracy and validation of our database.
V1.0.9 update
Feb. 15, 2022, 8: 30 p.m.
We added new functions that users can submit the demo tasks or check the analysis results of demo tasks to get familiar with the task submission procedure.
V1.0.8 update
Jan. 30, 2022, 9:20 a.m.
We created the tutorial page.
V1.0.7 update
Dec. 28, 2021, 12:30 p.m.
Analysis module categorization & Submit page logic rewritting.
V1.0.6 update
Dec. 1, 2021, 11:25 p.m.
We fixed known bugs.
V1.0.5 update
Nov. 5, 2021, 10:20 p.m.
We added new functions. Users are allowed to create their own datasets using samples from our database.
V1.0.4 update
Nov. 2, 2021, 5:30 p.m.
More analysis modules have passed testing.
V1.0.3 update
Oct. 15, 2021, 9:00 p.m.
We completed several analysis modules with data visualizations available.
V1.0.2 update
Seq. 18, 2021, 10:00 p.m.
Clinical data and RNA data uploading & Database recheck.
V1.0.1 update
Sep. 1, 2021, 9:30 p.m.
we beautified home page and added the contact page and the privacy terms page.
Add database pages
Aug. 5, 2021, 6:05 p.m.
Cancers, datasets and samples tables are ready to display.
Project initialization
July. 1, 2021, 12:30 p.m.
Main frame completion & Platform deployment.