You can click images to enlarge them and check details.

You can click images to enlarge them and check details.



Analysis Introduction




Welcome to TIMEDB Analysis


TIMEDB provides 18 online tumor immune microenvironment analyses, details are shown in the following table:

Analysis Category Analysis
Regression Tools TIMEDB Decov CIBERSORT
TIMEDB Decov TIMER
TIMEDB Decov EPIC
TIMEDB Decov ABIS
TIMEDB Decov quanTIseq
Enrichment Tools TIMEDB Decov xCell
TIMEDB Decov MCPcounter
TIMEDB Decov ConsensusTME
Unsupervised Tools TIMEDB Decov Linseed
Consensus Tools TIMEDB Consensus array
TIMEDB Consensus RNA-Seq
Datasets Comparison TIMEDB Batch Effect
TIME Estimation Comparsion TIMEDB Comparison array
TIMEDB Comparison RNA-Seq
Patient Subtyping TIMEDB Cell Fraction Subtyping
TIMEDB C1-C6 Subtyping
Survival Analysis TIMEDB HR OR
TIMEDB KM Estimator
Colrrelation Analysis TIMEDB Cell Interaction
TIMEDB Cell Correlation
Different Expression TIMEDB Immunoregulator


Analysis submit and check

TIMEDB provides a friendly submission page to guides users across the whole task submission procedure step by step.

Users could view detailed analysis tutorial as well as running demo and viewing demo results with one click.


Task submission procedure has two parts, file uploading or TIMEDB dataset choosing, and parameter setting. In particular, users can upload their own files for analysis, or they can choose one dataset available in TIMEDB. We provide detailed descriptions for inputs and parameters as well as demo files to help users get familiar with input files format. Please be noted that uploaded files should contain at least two samples.


Users can enter the workspace page to check status and results of submitted tasks if any. TIMEDB provides interfaces for downloading output files and corresponding interactive visualizations.


Click to view the detailed steps of submitting the analysis.



Contact with us if you meet some problems

You may contact us:

Dr LI, Shuaicheng

Email: shuaicli@cityu.edu.hk